pygtop.shared (Shared objects)

Objects not specific to ligands or targets.

class pygtop.shared.DatabaseLink(json_data)

A link to an external database, containing accession and species information.

Parameters:json_data – A dictionary obtained from the web services.

accession()

The Accession code.

database()

The Database being linked to.

url()

The URL for this database entry.

species()

The specific species the database entry refers to.

class pygtop.shared.Gene(json_data)

A gene for a pyGtoP target.

Parameters:json_data – A dictionary obtained from the web services.

target_id()

The ID of the pyGtoP target derived from this gene.

species()

The species the gene is from.

gene_symbol()

The gene’s code.

gene_name()

The gene’s name.

official_gene_id()

The gene’s official ID.

genomic_location()

The gene’s location in its genome.

amino_acids()

The number of amino acids the gene codes for.

transmembrane_domains()

The number of amino acids in the resultant protein.

pore_loops()

The number of pore loops in the resultant protein.

pygtop.shared.strip_html(func)

A decorator which, when applied to a function, will add a ‘strip_html’ keyword argument - if set to True this will strip any HTML from the function’s output.