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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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W
A
abbreviation() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
absorption_and_distribution_comments() (pygtop.ligands.Ligand method)
accession() (pygtop.shared.DatabaseLink method)
action() (pygtop.interactions.Interaction method)
active_drug_ids() (pygtop.ligands.Ligand method)
active_drugs() (pygtop.ligands.Ligand method)
affinity_high() (pygtop.interactions.Interaction method)
affinity_low() (pygtop.interactions.Interaction method)
affinity_type() (pygtop.interactions.Interaction method)
all_external_pdbs() (pygtop.interactions.Interaction method)
(pygtop.ligands.Ligand method)
all_pdbs() (pygtop.interactions.Interaction method)
(pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
amino_acids() (pygtop.shared.Gene method)
approval_source() (pygtop.ligands.Ligand method)
approved() (pygtop.ligands.Ligand method)
ask_about_molecupy() (in module pygtop.pdb)
B
bioactivity_comments() (pygtop.ligands.Ligand method)
C
chemical_modifications() (pygtop.ligands.Ligand method)
clinical_use_comments() (pygtop.ligands.Ligand method)
complex_ids() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
complexes() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
D
database() (pygtop.shared.DatabaseLink method)
database_links() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
DatabaseLink (class in pygtop.shared)
E
elimination_comments() (pygtop.ligands.Ligand method)
endogenous() (pygtop.interactions.Interaction method)
F
families() (pygtop.targets.Target method)
family_id() (pygtop.targets.TargetFamily method)
family_ids() (pygtop.targets.Target method)
find_in_pdb_by_mass() (pygtop.ligands.Ligand method)
find_in_pdb_by_name() (pygtop.ligands.Ligand method)
find_in_pdb_by_peptide_string() (pygtop.ligands.Ligand method)
find_in_pdb_by_smiles() (pygtop.ligands.Ligand method)
G
Gene (class in pygtop.shared)
gene_name() (pygtop.shared.Gene method)
gene_symbol() (pygtop.shared.Gene method)
general_comments() (pygtop.ligands.Ligand method)
genes() (pygtop.targets.Target method)
genomic_location() (pygtop.shared.Gene method)
get_all_interactions() (in module pygtop.interactions)
get_all_ligands() (in module pygtop.ligands)
get_all_target_families() (in module pygtop.targets)
get_all_targets() (in module pygtop.targets)
get_interaction_by_id() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
get_json_from_gtop() (in module pygtop.gtop)
get_ligand_by_id() (in module pygtop.ligands)
get_ligand_by_name() (in module pygtop.ligands)
get_ligands_by() (in module pygtop.ligands)
get_ligands_by_smiles() (in module pygtop.ligands)
get_target_by_id() (in module pygtop.targets)
get_target_by_name() (in module pygtop.targets)
get_target_family_by_id() (in module pygtop.targets)
get_targets_by() (in module pygtop.targets)
gtop_pdbs() (pygtop.interactions.Interaction method)
(pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
H
het_pdbs() (pygtop.ligands.Ligand method)
hydrogen_bond_acceptors() (pygtop.ligands.Ligand method)
hydrogen_bond_donors() (pygtop.ligands.Ligand method)
I
inchi() (pygtop.ligands.Ligand method)
inchi_key() (pygtop.ligands.Ligand method)
inchi_pdbs() (pygtop.ligands.Ligand method)
inn() (pygtop.ligands.Ligand method)
Interaction (class in pygtop.interactions)
interaction_id() (pygtop.interactions.Interaction method)
interaction_type() (pygtop.interactions.Interaction method)
interactions() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
iupac_name() (pygtop.ligands.Ligand method)
L
labelled() (pygtop.ligands.Ligand method)
Ligand (class in pygtop.ligands)
ligand() (pygtop.interactions.Interaction method)
ligand_id() (pygtop.interactions.Interaction method)
(pygtop.ligands.Ligand method)
ligand_type() (pygtop.ligands.Ligand method)
ligands() (pygtop.targets.Target method)
lipinski_rules_broken() (pygtop.ligands.Ligand method)
log_p() (pygtop.ligands.Ligand method)
M
mechanism_of_action_comments() (pygtop.ligands.Ligand method)
metabolism_comments() (pygtop.ligands.Ligand method)
molecular_weight() (pygtop.ligands.Ligand method)
mutations_and_pathophysiology_comments() (pygtop.ligands.Ligand method)
N
name() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
(pygtop.targets.TargetFamily method)
name_pdbs() (pygtop.ligands.Ligand method)
NoSuchInteractionError
NoSuchLigandError
NoSuchTargetError
NoSuchTargetFamilyError
NoSuchTypeError
O
official_gene_id() (pygtop.shared.Gene method)
one_letter_sequence() (pygtop.ligands.Ligand method)
organ_function_impairments_comments() (pygtop.ligands.Ligand method)
P
parent_families() (pygtop.targets.TargetFamily method)
parent_family_ids() (pygtop.targets.TargetFamily method)
population_pharmacokinetics_comments() (pygtop.ligands.Ligand method)
pore_loops() (pygtop.shared.Gene method)
post_translational_modifications() (pygtop.ligands.Ligand method)
primary_target() (pygtop.interactions.Interaction method)
prodrug_ids() (pygtop.ligands.Ligand method)
prodrugs() (pygtop.ligands.Ligand method)
pygtop.exceptions (module)
pygtop.gtop (module)
pygtop.interactions (module)
pygtop.ligands (module)
pygtop.pdb (module)
pygtop.shared (module)
pygtop.targets (module)
Q
query_rcsb() (in module pygtop.pdb)
query_rcsb_advanced() (in module pygtop.pdb)
R
radioactive() (pygtop.ligands.Ligand method)
rotatable_bonds() (pygtop.ligands.Ligand method)
S
sequence_pdbs() (pygtop.ligands.Ligand method)
smiles() (pygtop.ligands.Ligand method)
smiles_pdbs() (pygtop.ligands.Ligand method)
species() (pygtop.interactions.Interaction method)
(pygtop.ligands.Ligand method)
(pygtop.shared.DatabaseLink method)
(pygtop.shared.Gene method)
strip_html() (in module pygtop.shared)
sub_families() (pygtop.targets.TargetFamily method)
sub_family_ids() (pygtop.targets.TargetFamily method)
subunit_ids() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
subunits() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
synonyms() (pygtop.ligands.Ligand method)
(pygtop.targets.Target method)
systematic_name() (pygtop.targets.Target method)
T
Target (class in pygtop.targets)
target() (pygtop.interactions.Interaction method)
target_id() (pygtop.interactions.Interaction method)
(pygtop.shared.Gene method)
(pygtop.targets.Target method)
target_ids() (pygtop.targets.TargetFamily method)
target_type() (pygtop.targets.Target method)
TargetFamily (class in pygtop.targets)
targets() (pygtop.ligands.Ligand method)
(pygtop.targets.TargetFamily method)
three_letter_sequence() (pygtop.ligands.Ligand method)
topological_polar_surface_area() (pygtop.ligands.Ligand method)
transmembrane_domains() (pygtop.shared.Gene method)
U
uniprot_pdbs() (pygtop.targets.Target method)
url() (pygtop.shared.DatabaseLink method)
W
withdrawn() (pygtop.ligands.Ligand method)
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